Calculate test Sensitivity and Specificity and ROC curves
This utility calculates test sensitivity and specificity for a test producing a continuous outcome. Suggested cut-points are calculated for a range of target values for sensitivity and specificity. A ROC curve and two-grah ROC curve are generated and Youden's index (J and test efficiency (for selected prevalence values (are also calculated).
- - the desired level of confidence in the resulting sensitivity and specificity estimates; and
- - two columns of data for analysis. Data required is a series of test results for both infected and uninfected individuals. This data can be pasted in either of two formats:
- - stacked - the first column contains status identifiers as either "Infected" or "Uninfected" and the second column contains the corresponding test result; or
- - unstacked - separate columns contain test results for infected and uninfected individuals. Column order is unimportant but columns must be labelled appropriately as "Infected" or "Uninfected" in a header row;
- - numerical and graphical summaries of testing results for both infected and uninfected groups;
- - cut-point values to achieve minimum target values for both sensitivity and specificity along with corresponding estimates and Wilson binomial confidence intervals;
- - one and two-graph ROC curves, with estimated AUC for the one-graph curve;
- - area under the ROC curve (AUC) and associated DeLong confidence limits and Z test. See DeLong et al. (1988). Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach. Biometrics 44:837-845;
- - graphs of Youden's J Index and test efficiency for a range of prevalence values;
- - graphs of mis-classification cost terms for a range of prevalence values and relative costs of false negative/false positive; and
- - detailed sensitivity and specificity results in a downloadable spreadsheet file.
For more information, see Greiner, M, Pfeiffer, D and Smith, RD (2000). Principles and practical application of the receiver-operating characteristic analysis for diagmostic tests. Preventive Veterinary Medicine 45:23-41.
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